OVERVIEW




PhyloCompare-ASP is an ASP-based approach to compare phylogenies. Phylogenies are compared and their similarity is determined with the help of distance measures among phylogenies (for a detailed discussion see [1]). We developed an online tool which can perform some of the features of PhyloCompare-ASP.


The input




The user provides a set of phylogenies (in Newick format) to PhyloCompare-ASP and selects one of the built-in distance measures. In addition, the user may (optional) set the number of similar/diverse phylogenies to-be-computed (n) and the maximum/minimum distance among them (k).


The output




The output of PhyloCompare-ASP is the distance matrix of the input phylogenies. If the user provides the n value then the tool outputs n most similar/diverse phylogenies. If the user provides n and k values then the tool outputs n-k similar/diverse phylogenies.


Download




Pre-compiled linux binaries: PhyloCompare-ASP (Linux)
Windows executables: PhyloCompare-ASP (Windows)



PUBLICATIONS




[1]. T. Eiter, E. Erdem, H. Erdogan, and M.Fink. Finding Similar or Diverse Solutions in Answer Set Programming. In Proc. of ICLP'09.